J3_2O45_012

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

2O45|1|A|U|34, 2O45|1|A|U|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_012 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.1403

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

2O45|1|A|C|32
2O45|1|A|C|33
2O45|1|A|U|34
2O45|1|A|G|35
*
2O45|1|A|C|457
2O45|1|A|G|458
2O45|1|A|A|459
2O45|1|A|U|460
2O45|1|A|A|461
2O45|1|A|G|462
2O45|1|A|C|463
2O45|1|A|G|464
2O45|1|A|C|465
2O45|1|A|A|466
2O45|1|A|U|467
2O45|1|A|A|468
2O45|1|A|G|469
2O45|1|A|U|470
2O45|1|A|A|471
2O45|1|A|C|472
*
2O45|1|A|G|479
2O45|1|A|G|480
2O45|1|A|A|481
2O45|1|A|A|482
2O45|1|A|A|483
2O45|1|A|G|484

Current chains

Chain A

23S rRNA

Nearby chains