J3_2O45_017

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUG*UUGGUAC*GUAUCGGGAGCUUCCUCGGAAGCGAAGU

Length

38 nucleotides

Bulged bases

2O45|1|A|U|1459, 2O45|1|A|U|1551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|A|1458
2O45|1|A|U|1459
2O45|1|A|G|1460
*
2O45|1|A|U|1481
2O45|1|A|U|1482
2O45|1|A|G|1483
2O45|1|A|G|1484
2O45|1|A|U|1485
2O45|1|A|A|1486
2O45|1|A|C|1487
*
2O45|1|A|G|1536
2O45|1|A|U|1537
2O45|1|A|A|1538
2O45|1|A|U|1539
2O45|1|A|C|1540
2O45|1|A|G|1541
2O45|1|A|G|1542
2O45|1|A|G|1543
2O45|1|A|A|1544
2O45|1|A|G|1545
2O45|1|A|C|1546
2O45|1|A|U|1547
2O45|1|A|U|1548
2O45|1|A|C|1549
2O45|1|A|C|1550
2O45|1|A|U|1551
2O45|1|A|C|1552
2O45|1|A|G|1553
2O45|1|A|G|1554
2O45|1|A|A|1555
2O45|1|A|A|1556
2O45|1|A|G|1557
2O45|1|A|C|1558
2O45|1|A|G|1559
2O45|1|A|A|1560
2O45|1|A|A|1561
2O45|1|A|G|1562
2O45|1|A|U|1563

Current chains

Chain A

23S rRNA

Nearby chains