J3_2O45_018

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCC*GCUUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

2O45|1|A|A|2367, 2O45|1|A|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_018 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.2958

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

2O45|1|A|G|2261
2O45|1|A|C|2262
2O45|1|A|C|2263
*
2O45|1|A|G|2363
2O45|1|A|C|2364
2O45|1|A|U|2365
2O45|1|A|U|2366
2O45|1|A|A|2367
2O45|1|A|G|2368
2O45|1|A|U|2369
2O45|1|A|G|2370
2O45|1|A|A|2371
2O45|1|A|A|2372
2O45|1|A|C|2373
2O45|1|A|C|2374
*
2O45|1|A|G|2400
2O45|1|A|A|2401
2O45|1|A|U|2402
2O45|1|A|C|2403
2O45|1|A|A|2404
2O45|1|A|A|2405
2O45|1|A|C|2406

Current chains

Chain A

23S rRNA

Nearby chains