J3_2OTJ_004

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

2OTJ|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTJ|1|0|G|1159
2OTJ|1|0|G|1160
2OTJ|1|0|A|1161
*
2OTJ|1|0|U|1185
2OTJ|1|0|C|1186
2OTJ|1|0|U|1187
2OTJ|1|0|A|1188
2OTJ|1|0|A|1189
2OTJ|1|0|G|1190
2OTJ|1|0|A|1191
2OTJ|1|0|A|1192
2OTJ|1|0|A|1193
2OTJ|1|0|A|1194
*
2OTJ|1|0|U|1205
2OTJ|1|0|U|1206
2OTJ|1|0|A|1207
2OTJ|1|0|C|1208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L10E

Chain I

50S ribosomal protein L11P