J3_2OTJ_005

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

2OTJ|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OTJ_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0374

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2OTJ|1|0|C|1404
2OTJ|1|0|U|1405
2OTJ|1|0|A|1406
2OTJ|1|0|A|1407
2OTJ|1|0|U|1408
2OTJ|1|0|G|1409
*
2OTJ|1|0|C|1700
2OTJ|1|0|A|1701
2OTJ|1|0|U|1702
2OTJ|1|0|G|1703
*
2OTJ|1|0|C|1715
2OTJ|1|0|A|1716
2OTJ|1|0|A|1717
2OTJ|1|0|G|1718

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e