J3_2OTL_004

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

2OTL|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTL|1|0|G|1159
2OTL|1|0|G|1160
2OTL|1|0|A|1161
*
2OTL|1|0|U|1185
2OTL|1|0|C|1186
2OTL|1|0|U|1187
2OTL|1|0|A|1188
2OTL|1|0|A|1189
2OTL|1|0|G|1190
2OTL|1|0|A|1191
2OTL|1|0|A|1192
2OTL|1|0|A|1193
2OTL|1|0|A|1194
*
2OTL|1|0|U|1205
2OTL|1|0|U|1206
2OTL|1|0|A|1207
2OTL|1|0|C|1208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L10E

Chain I

50S ribosomal protein L11P