J3_2QA4_002

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

2QA4|1|0|U|777, 2QA4|1|0|G|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_002 not in the Motif Atlas

Homologous match to J3_4V9F_002

Geometric discrepancy: 0.0648

The information below is about J3_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

2QA4|1|0|C|774
2QA4|1|0|G|775
2QA4|1|0|A|776
2QA4|1|0|U|777
2QA4|1|0|C|778
2QA4|1|0|U|779
2QA4|1|0|A|780
*
2QA4|1|0|U|866
2QA4|1|0|A|867
2QA4|1|0|G|868
*
2QA4|1|0|C|884
2QA4|1|0|G|885
2QA4|1|0|A|886
2QA4|1|0|G|887

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain A

50S ribosomal protein L2P

Chain M

50S ribosomal protein L15e