J3_2QA4_005

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

2QA4|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0788

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2QA4|1|0|C|1404
2QA4|1|0|U|1405
2QA4|1|0|A|1406
2QA4|1|0|A|1407
2QA4|1|0|U|1408
2QA4|1|0|G|1409
*
2QA4|1|0|C|1700
2QA4|1|0|A|1701
2QA4|1|0|U|1702
2QA4|1|0|G|1703
*
2QA4|1|0|C|1715
2QA4|1|0|A|1716
2QA4|1|0|A|1717
2QA4|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e