J3_2QA4_017

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_017 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0846

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

2QA4|1|0|U|1531
2QA4|1|0|G|1532
2QA4|1|0|A|1533
2QA4|1|0|C|1534
2QA4|1|0|G|1535
*
2QA4|1|0|C|1650
2QA4|1|0|C|1651
*
2QA4|1|0|G|1655
2QA4|1|0|A|1656
2QA4|1|0|A|1657
2QA4|1|0|A|1658
2QA4|1|0|A|1659
2QA4|1|0|G|1660

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae