J3_2QBZ_001

3D structure

PDB id

2QBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the M-Box Riboswitch Aptamer Domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGAUACG*CUG*CUAUGC

Length

17 nucleotides

Bulged bases

2QBZ|1|X|U|47, 2QBZ|1|X|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QBZ|1|X|G|43
2QBZ|1|X|A|44
2QBZ|1|X|G|45
2QBZ|1|X|A|46
2QBZ|1|X|U|47
2QBZ|1|X|A|48
2QBZ|1|X|C|49
2QBZ|1|X|G|50
*
2QBZ|1|X|C|124
2QBZ|1|X|U|125
2QBZ|1|X|G|126
*
2QBZ|1|X|C|137
2QBZ|1|X|U|138
2QBZ|1|X|A|139
2QBZ|1|X|U|140
2QBZ|1|X|G|141
2QBZ|1|X|C|142

Current chains

Chain X

M-Box RNA, ykoK riboswitch aptamer

Nearby chains