J3_2QEX_005

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

2QEX|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QEX_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0434

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2QEX|1|0|C|1404
2QEX|1|0|U|1405
2QEX|1|0|A|1406
2QEX|1|0|A|1407
2QEX|1|0|U|1408
2QEX|1|0|G|1409
*
2QEX|1|0|C|1700
2QEX|1|0|A|1701
2QEX|1|0|U|1702
2QEX|1|0|G|1703
*
2QEX|1|0|C|1715
2QEX|1|0|A|1716
2QEX|1|0|A|1717
2QEX|1|0|G|1718

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e