J3_2QEX_018

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QEX_018 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0577

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

2QEX|1|0|U|1531
2QEX|1|0|G|1532
2QEX|1|0|A|1533
2QEX|1|0|C|1534
2QEX|1|0|G|1535
*
2QEX|1|0|C|1650
2QEX|1|0|C|1651
*
2QEX|1|0|G|1655
2QEX|1|0|A|1656
2QEX|1|0|A|1657
2QEX|1|0|A|1658
2QEX|1|0|A|1659
2QEX|1|0|G|1660

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae