J3_2UU9_004
3D structure
- PDB id
- 2UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 2UU9|1|A|A|975, 2UU9|1|A|G|976, 2UU9|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UU9_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0566
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
2UU9|1|A|U|955
2UU9|1|A|U|956
2UU9|1|A|U|957
2UU9|1|A|A|958
2UU9|1|A|A|959
2UU9|1|A|U|960
2UU9|1|A|U|961
2UU9|1|A|C|962
*
2UU9|1|A|G|973
2UU9|1|A|A|974
2UU9|1|A|A|975
2UU9|1|A|G|976
2UU9|1|A|A|977
2UU9|1|A|A|978
2UU9|1|A|C|979
2UU9|1|A|C|980
2UU9|1|A|U|981
2UU9|1|A|U|982
2UU9|1|A|A|983
2UU9|1|A|C|984
*
2UU9|1|A|G|1221
2UU9|1|A|G|1222
2UU9|1|A|C|1223
2UU9|1|A|G|1224
2UU9|1|A|A|1225
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain S
- 30S RIBOSOMAL PROTEIN S19
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