J3_2UU9_006

3D structure

PDB id

2UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGGGAAC*GGUGC*GAGCCCUA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UU9|1|A|U|1000
2UU9|1|A|A|1001
2UU9|1|A|G|1001|||A
2UU9|1|A|G|1002
2UU9|1|A|G|1003
2UU9|1|A|A|1004
2UU9|1|A|A|1005
2UU9|1|A|C|1006
*
2UU9|1|A|G|1023
2UU9|1|A|G|1024
2UU9|1|A|U|1025
2UU9|1|A|G|1026
2UU9|1|A|C|1027
*
2UU9|1|A|G|1034
2UU9|1|A|A|1035
2UU9|1|A|G|1036
2UU9|1|A|C|1037
2UU9|1|A|C|1038
2UU9|1|A|C|1039
2UU9|1|A|U|1040
2UU9|1|A|A|1041

Current chains

Chain A

16S RRNA

Nearby chains