J3_2UUA_006

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGGAAC*GGUGC*GAGCCCU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UUA|1|A|A|1001
2UUA|1|A|G|1001|||A
2UUA|1|A|G|1002
2UUA|1|A|G|1003
2UUA|1|A|A|1004
2UUA|1|A|A|1005
2UUA|1|A|C|1006
*
2UUA|1|A|G|1023
2UUA|1|A|G|1024
2UUA|1|A|U|1025
2UUA|1|A|G|1026
2UUA|1|A|C|1027
*
2UUA|1|A|G|1034
2UUA|1|A|A|1035
2UUA|1|A|G|1036
2UUA|1|A|C|1037
2UUA|1|A|C|1038
2UUA|1|A|C|1039
2UUA|1|A|U|1040

Current chains

Chain A

16S RRNA

Nearby chains