J3_2UUB_004

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

2UUB|1|A|A|975, 2UUB|1|A|G|976, 2UUB|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UUB_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0422

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

2UUB|1|A|U|955
2UUB|1|A|U|956
2UUB|1|A|U|957
2UUB|1|A|A|958
2UUB|1|A|A|959
2UUB|1|A|U|960
2UUB|1|A|U|961
2UUB|1|A|C|962
*
2UUB|1|A|G|973
2UUB|1|A|A|974
2UUB|1|A|A|975
2UUB|1|A|G|976
2UUB|1|A|A|977
2UUB|1|A|A|978
2UUB|1|A|C|979
2UUB|1|A|C|980
2UUB|1|A|U|981
2UUB|1|A|U|982
2UUB|1|A|A|983
2UUB|1|A|C|984
*
2UUB|1|A|G|1221
2UUB|1|A|G|1222
2UUB|1|A|C|1223
2UUB|1|A|G|1224
2UUB|1|A|A|1225

Current chains

Chain A

16S RRNA

Nearby chains

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain N

30S RIBOSOMAL PROTEIN S14

Chain S

30S RIBOSOMAL PROTEIN S19

Chain Y

5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'