J3_2UUB_020

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGGGAAC*GGUGC*GAGCCCU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UUB|1|A|A|1001
2UUB|1|A|G|1001|||A
2UUB|1|A|G|1002
2UUB|1|A|G|1003
2UUB|1|A|A|1004
2UUB|1|A|A|1005
2UUB|1|A|C|1006
*
2UUB|1|A|G|1023
2UUB|1|A|G|1024
2UUB|1|A|U|1025
2UUB|1|A|G|1026
2UUB|1|A|C|1027
*
2UUB|1|A|G|1034
2UUB|1|A|A|1035
2UUB|1|A|G|1036
2UUB|1|A|C|1037
2UUB|1|A|C|1038
2UUB|1|A|C|1039
2UUB|1|A|U|1040

Current chains

Chain A

16S RRNA

Nearby chains