J3_2UUC_004

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

2UUC|1|A|A|975, 2UUC|1|A|G|976, 2UUC|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UUC_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0464

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2UUC|1|A|U|955
2UUC|1|A|U|956
2UUC|1|A|U|957
2UUC|1|A|A|958
2UUC|1|A|A|959
2UUC|1|A|U|960
2UUC|1|A|U|961
2UUC|1|A|C|962
*
2UUC|1|A|G|973
2UUC|1|A|A|974
2UUC|1|A|A|975
2UUC|1|A|G|976
2UUC|1|A|A|977
2UUC|1|A|A|978
2UUC|1|A|C|979
2UUC|1|A|C|980
2UUC|1|A|U|981
2UUC|1|A|U|982
2UUC|1|A|A|983
2UUC|1|A|C|984
*
2UUC|1|A|G|1221
2UUC|1|A|G|1222
2UUC|1|A|C|1223
2UUC|1|A|G|1224
2UUC|1|A|A|1225

Current chains

Chain A

16S RRNA

Nearby chains

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain N

30S RIBOSOMAL PROTEIN S14

Chain S

30S RIBOSOMAL PROTEIN S19

Chain Y

5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'