J3_2UXB_006

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

2UXB|1|A|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2UXB_006 not in the Motif Atlas

Homologous match to J3_4LFB_006

Geometric discrepancy: 0.5374

The information below is about J3_4LFB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32857.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

2UXB|1|A|G|1002
2UXB|1|A|G|1003
2UXB|1|A|A|1004
2UXB|1|A|A|1005
2UXB|1|A|C|1006
*
2UXB|1|A|G|1023
2UXB|1|A|G|1024
2UXB|1|A|U|1025
2UXB|1|A|G|1026
2UXB|1|A|C|1027
2UXB|1|A|C|1028
*
2UXB|1|A|G|1033
2UXB|1|A|G|1034
2UXB|1|A|A|1035
2UXB|1|A|G|1036
2UXB|1|A|C|1037
2UXB|1|A|C|1038

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains