3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2UXD_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0725
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

2UXD|1|A|C|936
2UXD|1|A|A|937
2UXD|1|A|A|938
2UXD|1|A|G|939
*
2UXD|1|A|C|1344
2UXD|1|A|U|1345
2UXD|1|A|A|1346
2UXD|1|A|G|1347
2UXD|1|A|U|1348
2UXD|1|A|A|1349
2UXD|1|A|A|1350
*
2UXD|1|A|U|1372
2UXD|1|A|G|1373
2UXD|1|A|A|1374
2UXD|1|A|A|1375
2UXD|1|A|U|1376
2UXD|1|A|A|1377
2UXD|1|A|C|1378
2UXD|1|A|G|1379

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain I
RIBOSOMAL PROTEIN S9

Coloring options:


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