J3_2UXD_004
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 2UXD|1|A|A|975, 2UXD|1|A|G|976, 2UXD|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UXD_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0735
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
2UXD|1|A|U|955
2UXD|1|A|U|956
2UXD|1|A|U|957
2UXD|1|A|A|958
2UXD|1|A|A|959
2UXD|1|A|U|960
2UXD|1|A|U|961
2UXD|1|A|C|962
*
2UXD|1|A|G|973
2UXD|1|A|A|974
2UXD|1|A|A|975
2UXD|1|A|G|976
2UXD|1|A|A|977
2UXD|1|A|A|978
2UXD|1|A|C|979
2UXD|1|A|C|980
2UXD|1|A|U|981
2UXD|1|A|U|982
2UXD|1|A|A|983
2UXD|1|A|C|984
*
2UXD|1|A|G|1221
2UXD|1|A|G|1222
2UXD|1|A|C|1223
2UXD|1|A|G|1224
2UXD|1|A|A|1225
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain J
- RIBOSOMAL PROTEIN S10
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain N
- RIBOSOMAL PROTEIN S14
- Chain S
- RIBOSOMAL PROTEIN S19
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