J3_2UXD_017

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

2UXD|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UXD|1|A|C|1116
2UXD|1|A|G|1117
2UXD|1|A|C|1118
*
2UXD|1|A|G|1155
2UXD|1|A|G|1156
2UXD|1|A|A|1157
2UXD|1|A|C|1158
2UXD|1|A|U|1159
2UXD|1|A|G|1160
2UXD|1|A|C|1161
2UXD|1|A|C|1162
*
2UXD|1|A|G|1174
2UXD|1|A|G|1175
2UXD|1|A|A|1176
2UXD|1|A|G|1177
2UXD|1|A|G|1178
2UXD|1|A|A|1179
2UXD|1|A|A|1180
2UXD|1|A|G|1181
2UXD|1|A|G|1182
2UXD|1|A|A|1183
2UXD|1|A|G|1184

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN S2

Chain G

RIBOSOMAL PROTEIN S7

Chain I

RIBOSOMAL PROTEIN S9

Chain J

RIBOSOMAL PROTEIN S10

Chain N

RIBOSOMAL PROTEIN S14