J3_2VQF_006

3D structure

PDB id

2VQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAGGGAAC*GGUGCC*GGAGCCCUA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2VQF|1|A|U|1000
2VQF|1|A|A|1001
2VQF|1|A|G|1002
2VQF|1|A|G|1003
2VQF|1|A|G|1003|||A
2VQF|1|A|A|1004
2VQF|1|A|A|1005
2VQF|1|A|C|1006
*
2VQF|1|A|G|1023
2VQF|1|A|G|1024
2VQF|1|A|U|1025
2VQF|1|A|G|1026
2VQF|1|A|C|1027
2VQF|1|A|C|1028
*
2VQF|1|A|G|1033
2VQF|1|A|G|1034
2VQF|1|A|A|1035
2VQF|1|A|G|1036
2VQF|1|A|C|1037
2VQF|1|A|C|1038
2VQF|1|A|C|1039
2VQF|1|A|U|1040
2VQF|1|A|A|1041

Current chains

Chain A

16S RRNA

Nearby chains