J3_2WW9_001

3D structure

PDB id

2WW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

AC*GAUACGUAA*UCGAAUCU

Length

19 nucleotides

Bulged bases

2WW9|1|D|U|60, 2WW9|1|D|C|62, 2WW9|1|D|C|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2WW9|1|D|A|44
2WW9|1|D|C|45
*
2WW9|1|D|G|58
2WW9|1|D|A|59
2WW9|1|D|U|60
2WW9|1|D|A|61
2WW9|1|D|C|62
2WW9|1|D|G|63
2WW9|1|D|U|64
2WW9|1|D|A|65
2WW9|1|D|A|66
*
2WW9|1|D|U|93
2WW9|1|D|C|94
2WW9|1|D|G|95
2WW9|1|D|A|96
2WW9|1|D|A|97
2WW9|1|D|U|98
2WW9|1|D|C|99
2WW9|1|D|U|100

Current chains

Chain D

25S RRNA

Nearby chains

Chain K

60S RIBOSOMAL PROTEIN L25

Chain L

60S RIBOSOMAL PROTEIN L26-A

Chain N

60S RIBOSOMAL PROTEIN L35

Chain O

60S RIBOSOMAL PROTEIN L39