J3_2WWA_003

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

2WWA|1|D|U|60, 2WWA|1|D|C|62

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2WWA_003 not in the Motif Atlas

Homologous match to J3_8P9A_067

Geometric discrepancy: 0.4747

The information below is about J3_8P9A_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

2WWA|1|D|A|44
2WWA|1|D|C|45
*
2WWA|1|D|G|58
2WWA|1|D|A|59
2WWA|1|D|U|60
2WWA|1|D|A|61
2WWA|1|D|C|62
2WWA|1|D|G|63
2WWA|1|D|U|64
*
2WWA|1|D|A|96
2WWA|1|D|A|97
2WWA|1|D|U|98
2WWA|1|D|C|99
2WWA|1|D|U|100

Current chains

Chain D

25S RRNA

Nearby chains

Chain K

60S RIBOSOMAL PROTEIN L25

Chain N

60S RIBOSOMAL PROTEIN L35

Chain O

60S RIBOSOMAL PROTEIN L39