J3_2WWB_001
3D structure
- PDB id
- 2WWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.48 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 2WWB|1|D|U|60, 2WWB|1|D|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2WWB_001 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.5233
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
2WWB|1|D|A|44
2WWB|1|D|C|45
*
2WWB|1|D|G|58
2WWB|1|D|A|59
2WWB|1|D|U|60
2WWB|1|D|A|61
2WWB|1|D|C|62
2WWB|1|D|G|63
2WWB|1|D|U|64
*
2WWB|1|D|A|96
2WWB|1|D|A|97
2WWB|1|D|U|98
2WWB|1|D|C|99
2WWB|1|D|U|100
Current chains
- Chain D
- 5.8S RRNA
Nearby chains
- Chain K
- 60S RIBOSOMAL PROTEIN L25
- Chain N
- 60S RIBOSOMAL PROTEIN L35
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: