J3_2ZJP_006

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUG*CUAAGGUAG*CGAAAG

Length

18 nucleotides

Bulged bases

2ZJP|1|X|A|1954

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|C|1825
2ZJP|1|X|U|1826
2ZJP|1|X|G|1827
*
2ZJP|1|X|C|1888
2ZJP|1|X|U|1909
2ZJP|1|X|A|1910
2ZJP|1|X|A|1911
2ZJP|1|X|G|1912
2ZJP|1|X|G|1913
2ZJP|1|X|U|1914
2ZJP|1|X|A|1915
2ZJP|1|X|G|1916
*
2ZJP|1|X|C|1950
2ZJP|1|X|G|1951
2ZJP|1|X|A|1952
2ZJP|1|X|A|1953
2ZJP|1|X|A|1954
2ZJP|1|X|G|1955

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2