J3_2ZJP_007

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUG*CUAAC*GGACCGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|A|2073
2ZJP|1|X|U|2074
2ZJP|1|X|U|2075
2ZJP|1|X|G|2076
*
2ZJP|1|X|C|2179
2ZJP|1|X|U|2180
2ZJP|1|X|A|2181
2ZJP|1|X|A|2182
2ZJP|1|X|C|2183
*
2ZJP|1|X|G|2202
2ZJP|1|X|G|2203
2ZJP|1|X|A|2204
2ZJP|1|X|C|2205
2ZJP|1|X|C|2206
2ZJP|1|X|G|2207
2ZJP|1|X|U|2208

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28