J3_3B4C_001

3D structure

PDB id

3B4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UGAC*GAGACAUC

Length

14 nucleotides

Bulged bases

3B4C|1|B|G|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3B4C_001 not in the Motif Atlas

Geometric match to J3_3G9C_002

Geometric discrepancy: 0.3177

The information below is about J3_3G9C_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60873.1

Basepair signature

cWW-cSH-tWW-F-tHS-F-cWW-tWS-cWW

Number of instances in this motif group

1

Unit IDs

3B4C|1|A|G|7
3B4C|1|A|G|8
*
3B4C|1|B|U|33
3B4C|1|B|G|34
3B4C|1|B|A|35
3B4C|1|B|C|36
*
3B4C|1|B|G|53
3B4C|1|B|A|54
3B4C|1|B|G|55
3B4C|1|B|A|56
3B4C|1|B|C|57
3B4C|1|B|A|58
3B4C|1|B|U|59
3B4C|1|B|C|60

Current chains

Chain A

glmS ribozyme substrate with a 2'5'-phosphodiester linkage

Chain B

glmS ribozyme RNA

Nearby chains