J3_3CC2_005

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3CC2|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0252

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CC2|1|0|C|1404
3CC2|1|0|U|1405
3CC2|1|0|A|1406
3CC2|1|0|A|1407
3CC2|1|0|U|1408
3CC2|1|0|G|1409
*
3CC2|1|0|C|1700
3CC2|1|0|A|1701
3CC2|1|0|U|1702
3CC2|1|0|G|1703
*
3CC2|1|0|C|1715
3CC2|1|0|A|1716
3CC2|1|0|A|1717
3CC2|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e