J3_3CCJ_005

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3CCJ|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCJ_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0703

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CCJ|1|0|C|1404
3CCJ|1|0|U|1405
3CCJ|1|0|A|1406
3CCJ|1|0|A|1407
3CCJ|1|0|U|1408
3CCJ|1|0|G|1409
*
3CCJ|1|0|C|1700
3CCJ|1|0|A|1701
3CCJ|1|0|U|1702
3CCJ|1|0|G|1703
*
3CCJ|1|0|C|1715
3CCJ|1|0|A|1716
3CCJ|1|0|A|1717
3CCJ|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain X

50S ribosomal protein L31e