J3_3CCL_015

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCL_015 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0429

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

3CCL|1|0|U|1531
3CCL|1|0|G|1532
3CCL|1|0|A|1533
3CCL|1|0|C|1534
3CCL|1|0|G|1535
*
3CCL|1|0|C|1650
3CCL|1|0|C|1651
*
3CCL|1|0|G|1655
3CCL|1|0|A|1656
3CCL|1|0|A|1657
3CCL|1|0|A|1658
3CCL|1|0|A|1659
3CCL|1|0|G|1660

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae