J3_3CCQ_005

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3CCQ|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCQ_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0435

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CCQ|1|0|C|1404
3CCQ|1|0|U|1405
3CCQ|1|0|A|1406
3CCQ|1|0|A|1407
3CCQ|1|0|U|1408
3CCQ|1|0|G|1409
*
3CCQ|1|0|C|1700
3CCQ|1|0|A|1701
3CCQ|1|0|U|1702
3CCQ|1|0|G|1703
*
3CCQ|1|0|C|1715
3CCQ|1|0|A|1716
3CCQ|1|0|A|1717
3CCQ|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e