3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGACG*CC*GAAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3CCQ_014 not in the Motif Atlas
Homologous match to J3_4V9F_017
Geometric discrepancy: 0.0433
The information below is about J3_4V9F_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

3CCQ|1|0|U|1531
3CCQ|1|0|G|1532
3CCQ|1|0|A|1533
3CCQ|1|0|C|1534
3CCQ|1|0|G|1535
*
3CCQ|1|0|C|1650
3CCQ|1|0|C|1651
*
3CCQ|1|0|G|1655
3CCQ|1|0|A|1656
3CCQ|1|0|A|1657
3CCQ|1|0|A|1658
3CCQ|1|0|A|1659
3CCQ|1|0|G|1660

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain A
50S ribosomal protein L2P
Chain Z
50S ribosomal protein L37Ae

Coloring options:


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