J3_3CD6_005

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3CD6|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CD6_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0487

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CD6|1|0|C|1404
3CD6|1|0|U|1405
3CD6|1|0|A|1406
3CD6|1|0|A|1407
3CD6|1|0|U|1408
3CD6|1|0|G|1409
*
3CD6|1|0|C|1700
3CD6|1|0|A|1701
3CD6|1|0|U|1702
3CD6|1|0|G|1703
*
3CD6|1|0|C|1715
3CD6|1|0|A|1716
3CD6|1|0|A|1717
3CD6|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e