J3_3CD6_018

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CD6_018 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0572

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

3CD6|1|0|U|1531
3CD6|1|0|G|1532
3CD6|1|0|A|1533
3CD6|1|0|C|1534
3CD6|1|0|G|1535
*
3CD6|1|0|C|1650
3CD6|1|0|C|1651
*
3CD6|1|0|G|1655
3CD6|1|0|A|1656
3CD6|1|0|A|1657
3CD6|1|0|A|1658
3CD6|1|0|A|1659
3CD6|1|0|G|1660

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae