J3_3CF5_008

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

3CF5|1|X|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CF5|1|X|C|2274
3CF5|1|X|U|2275
3CF5|1|X|C|2276
*
3CF5|1|X|G|2300
3CF5|1|X|A|2301
3CF5|1|X|G|2302
3CF5|1|X|C|2303
*
3CF5|1|X|G|2310
3CF5|1|X|U|2311
3CF5|1|X|A|2312
3CF5|1|X|G|2313
3CF5|1|X|A|2314
3CF5|1|X|A|2315
3CF5|1|X|G|2316

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain L

50S RIBOSOMAL PROTEIN L18

Chain T

50S RIBOSOMAL PROTEIN L27

Chain Z

5S ribosomal RNA; 5S rRNA