J3_3CMA_004

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

3CMA|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CMA|1|0|G|1159
3CMA|1|0|G|1160
3CMA|1|0|A|1161
*
3CMA|1|0|U|1185
3CMA|1|0|C|1186
3CMA|1|0|U|1187
3CMA|1|0|A|1188
3CMA|1|0|A|1189
3CMA|1|0|G|1190
3CMA|1|0|A|1191
3CMA|1|0|A|1192
3CMA|1|0|A|1193
3CMA|1|0|A|1194
*
3CMA|1|0|U|1205
3CMA|1|0|U|1206
3CMA|1|0|A|1207
3CMA|1|0|C|1208

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain G

50S ribosomal protein L10E

Chain I

50S ribosomal protein L11P