J3_3CMA_014

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CMA_014 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0487

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

3CMA|1|0|U|1531
3CMA|1|0|G|1532
3CMA|1|0|A|1533
3CMA|1|0|C|1534
3CMA|1|0|G|1535
*
3CMA|1|0|C|1650
3CMA|1|0|C|1651
*
3CMA|1|0|G|1655
3CMA|1|0|A|1656
3CMA|1|0|A|1657
3CMA|1|0|A|1658
3CMA|1|0|A|1659
3CMA|1|0|G|1660

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae