J3_3CXC_005

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3CXC|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CXC_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0494

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|C|1404
3CXC|1|0|U|1405
3CXC|1|0|A|1406
3CXC|1|0|A|1407
3CXC|1|0|U|1408
3CXC|1|0|G|1409
*
3CXC|1|0|C|1700
3CXC|1|0|A|1701
3CXC|1|0|U|1702
3CXC|1|0|G|1703
*
3CXC|1|0|C|1715
3CXC|1|0|A|1716
3CXC|1|0|A|1717
3CXC|1|0|G|1718

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E