J3_3G6E_003

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

3G6E|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3G6E_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0416

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

3G6E|1|0|C|789
3G6E|1|0|A|790
3G6E|1|0|A|791
*
3G6E|1|0|U|823
3G6E|1|0|G|824
3G6E|1|0|U|825
3G6E|1|0|U|826
3G6E|1|0|A|827
3G6E|1|0|G|828
*
3G6E|1|0|C|853
3G6E|1|0|G|854
3G6E|1|0|U|855
3G6E|1|0|G|856

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae