J3_3G6E_011

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UG*CUGCAAAG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3G6E_011 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.0376

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

3G6E|1|0|U|27
3G6E|1|0|G|28
*
3G6E|1|0|C|480
3G6E|1|0|U|481
3G6E|1|0|G|482
3G6E|1|0|C|483
3G6E|1|0|A|484
3G6E|1|0|A|485
3G6E|1|0|A|486
3G6E|1|0|G|487
*
3G6E|1|0|C|515
3G6E|1|0|A|516

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4P

Chain R

50S ribosomal protein L22P

Chain T

50S ribosomal protein L24P