J3_3HJW_001

3D structure

PDB id

3HJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GCG*UUC*G(FHU)GC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: FHU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01425.1

Basepair signature

cWW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3HJW|1|D|G|15
3HJW|1|D|C|16
3HJW|1|D|G|17
*
3HJW|1|D|U|39
3HJW|1|D|U|40
3HJW|1|D|C|41
*
3HJW|1|E|G|9
3HJW|1|E|FHU|10
3HJW|1|E|G|11
3HJW|1|E|C|12

Current chains

Chain D

RNA (58-MER)

Chain E

5'-R(*GP*AP*GP*CP*GP*(FHU)P*GP*CP*GP*GP*UP*UP*U)-3'

Nearby chains

Chain A

Pseudouridine synthase Cbf5

Chain B

Ribosome biogenesis protein Nop10