J3_3I55_005

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

3I55|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3I55_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0608

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3I55|1|0|C|1404
3I55|1|0|U|1405
3I55|1|0|A|1406
3I55|1|0|A|1407
3I55|1|0|U|1408
3I55|1|0|G|1409
*
3I55|1|0|C|1700
3I55|1|0|A|1701
3I55|1|0|U|1702
3I55|1|0|G|1703
*
3I55|1|0|C|1715
3I55|1|0|A|1716
3I55|1|0|A|1717
3I55|1|0|G|1718

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e