J3_3I56_014

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3I56_014 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0396

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

3I56|1|0|U|1531
3I56|1|0|G|1532
3I56|1|0|A|1533
3I56|1|0|C|1534
3I56|1|0|G|1535
*
3I56|1|0|C|1650
3I56|1|0|C|1651
*
3I56|1|0|G|1655
3I56|1|0|A|1656
3I56|1|0|A|1657
3I56|1|0|A|1658
3I56|1|0|A|1659
3I56|1|0|G|1660

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae