J3_3IYR_001

3D structure

PDB id

3IYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

tmRNA-SmpB: a journey to the center of the bacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GAAACGGUCUCGACGGGGG*CCUUCGGACG*CC

Length

31 nucleotides

Bulged bases

3IYR|1|A|A|9, 3IYR|1|A|C|11, 3IYR|1|A|C|15, 3IYR|1|A|A|320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3IYR|1|A|G|7
3IYR|1|A|A|8
3IYR|1|A|A|9
3IYR|1|A|A|10
3IYR|1|A|C|11
3IYR|1|A|G|12
3IYR|1|A|G|13
3IYR|1|A|U|14
3IYR|1|A|C|15
3IYR|1|A|U|16
3IYR|1|A|C|17
3IYR|1|A|G|18
3IYR|1|A|A|19
3IYR|1|A|C|20
3IYR|1|A|G|21
3IYR|1|A|G|22
3IYR|1|A|G|23
3IYR|1|A|G|24
3IYR|1|A|G|25
*
3IYR|1|A|C|313
3IYR|1|A|C|314
3IYR|1|A|U|315
3IYR|1|A|U|316
3IYR|1|A|C|317
3IYR|1|A|G|318
3IYR|1|A|G|319
3IYR|1|A|A|320
3IYR|1|A|C|321
3IYR|1|A|G|322
*
3IYR|1|A|C|338
3IYR|1|A|C|339

Current chains

Chain A

tmRNA

Nearby chains

Chain B

SsrA-binding protein