J3_3IZ4_001

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAUUCUGGAUUCGAC*GGACG*CC

Length

22 nucleotides

Bulged bases

3IZ4|1|A|U|9, 3IZ4|1|A|G|14, 3IZ4|1|A|A|15, 3IZ4|1|A|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3IZ4_001 not in the Motif Atlas

Homologous match to J3_2CZJ_005

Geometric discrepancy: 0.591

The information below is about J3_2CZJ_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46173.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3IZ4|1|A|G|7
3IZ4|1|A|A|8
3IZ4|1|A|U|9
3IZ4|1|A|U|10
3IZ4|1|A|C|11
3IZ4|1|A|U|12
3IZ4|1|A|G|13
3IZ4|1|A|G|14
3IZ4|1|A|A|15
3IZ4|1|A|U|16
3IZ4|1|A|U|17
3IZ4|1|A|C|18
3IZ4|1|A|G|19
3IZ4|1|A|A|20
3IZ4|1|A|C|21
*
3IZ4|1|A|G|347
3IZ4|1|A|G|348
3IZ4|1|A|A|349
3IZ4|1|A|C|350
3IZ4|1|A|G|351
*
3IZ4|1|A|C|367
3IZ4|1|A|C|368

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains

Chain B

SsrA-binding protein