J3_3J5L_001
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 3J5L|1|A|U|686, 3J5L|1|A|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J5L_001 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0624
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J5L|1|A|U|683
3J5L|1|A|G|684
3J5L|1|A|A|685
3J5L|1|A|U|686
3J5L|1|A|C|687
3J5L|1|A|U|688
3J5L|1|A|A|689
*
3J5L|1|A|U|773
3J5L|1|A|G|774
3J5L|1|A|G|775
*
3J5L|1|A|C|791
3J5L|1|A|A|792
3J5L|1|A|A|793
3J5L|1|A|A|794
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain 6
- Erythromycin resistance leader peptide
- Chain C
- 50S ribosomal protein L2
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