J3_3J5L_002

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J5L_002 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0601

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J5L|1|A|C|698
3J5L|1|A|A|699
3J5L|1|A|G|700
*
3J5L|1|A|C|732
3J5L|1|A|G|733
3J5L|1|A|A|734
3J5L|1|A|A|735
3J5L|1|A|C|736
*
3J5L|1|A|G|760
3J5L|1|A|A|761
3J5L|1|A|U|762
3J5L|1|A|G|763

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2