J3_3J5L_013

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J5L_013 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0608

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3J5L|1|A|U|1344
3J5L|1|A|C|1345
3J5L|1|A|G|1346
3J5L|1|A|A|1347
3J5L|1|A|C|1348
3J5L|1|A|C|1349
*
3J5L|1|A|G|1382
3J5L|1|A|A|1383
3J5L|1|A|A|1384
3J5L|1|A|A|1385
*
3J5L|1|A|U|1402
3J5L|1|A|A|1403

Current chains

Chain A

23S ribsomal RNA

Nearby chains